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dsh-science

⭐ 9 · ✅ active · plugin
Type plugin Category UI & experience
Stars ⭐ 9 Status ✅ active
Author omdsh-dev Updated —

One-liner

Reproducible Python and R work on DeepSeek Harness, built as plugins.

About

--- A Claude Science–style research workbench for DeepSeek Harness — for genomics / pathogens / human health / bioinformatics projects. - ReAct research loop engine — research_init / research_state / research_hypothesis / research_experiment / research_findings / research_phase / research_review / research_report, persisted in a research-manifest.json state machine (Question → Hypothesis → Experiment → Observe → Analyze → Conclude → Next Question). - Versioned artifacts with provenance — artifact_save / artifact_list / artifact_show / artifact_diff / artifact_verify / artifact_deprecate / artifact_reproduce: every result saved as artifacts//v/ with per-file SHA-256, artifact.json provenance (

✨ Key Features

  • ReAct research loop engine — research_init / research_state / research_hypothesis / research_experiment / research_findings / research_phase / `
  • Versioned artifacts with provenance — artifact_save / artifact_list / artifact_show / artifact_diff / artifact_verify / artifact_deprecate / `ar
  • Remote compute engine (SSH / HPC clusters) — 16 tools: remote_host_add / remote_host_probe / remote_host_notes / remote_run / remote_status / `rem
  • Remote Hosts config UI (bundle/profile-level) — a Settings > 远程主机 page (the analog of Claude Science's Settings > Compute > SSH hosts): list/add/probe/edit/
  • Model Tier router (tiered, cross-provider) — via the companion bundle dsh-model-tier: within one session, automatically routes
  • 11 science skills — research-loop, science-project-setup, artifact-provenance, scientific-reviewer, literature-connector, parallel-delegation, manuscript-wr

📦 Install

dsh plugin --profile web add dsh-science            # after npm publish
# or straight from GitHub:
dsh plugin --profile web add "github:biociao/dsh-science"

🚀 Quick Start

git clone https://github.com/biociao/dsh-science ~/.dsh/.agent-presets/science
# or from a local checkout:
bash scripts/install.sh          # copy   (or: bash scripts/install.sh link)

📚 Learn more

Quick start (first session)

  1. research_init — create research-manifest.json + the project skeleton (experiments/ literature/ artifacts/ analyses/ figures/ manuscript/ reviews/ data/ envs/). 2. Read research_state at the start of every session; the loop state persists across sessions. 3. Run the loop: research_hypothesis (H1/H2/…) → research_experiment (E01/…, creates `experiments//{design.md,log.md,code/,res

FAQ

Why subpath exports and not relative paths in the bundle? dsh plugin add installs the package into the profile and its cordis.patch.yml rows join the profile composition. The profile loader resolves a row name relative to the profile directory (not the package), so ./engines/x.mjs fails with ERR_MODULE_NOT_FOUND. Referencing dsh-science/engines/x.mjs (subpath export, exports